Molecular dynamics and structural biology videos
Explore molecular simulations with English explanations, structural references and links to the original videos.
English version reviewed
Watch molecular dynamics visualizations of proteins, enzymes and protein–ligand complexes. Each English guide explains what the original video shows, links to the available structural records and distinguishes a simulation from experimental or clinical evidence.
Choose a video below to watch it and read its guide. The original audio and on-screen labels are preserved. You can switch to the corresponding Turkish page at any time.
A malaria-parasite bromodomain with RMM21: PDB 9HHB
An English guide to the PvBDP1–RMM21 visualization and the distinction between an early research target and an established malaria treatment.
NST-628 and the RAF–MEK complex: a research visualization
Explore the structural model behind the NST-628 animation without confusing preclinical findings with proven clinical treatment.
Glucosidase allostery and substrate displacement
Read the original glucosidase animation as an illustration of a proposed mechanism, with clear limits on what substrate motion proves.
A bound ligand in motion: reading a molecular dynamics trajectory
Learn how to distinguish ligand motion, protein flexibility and camera movement in the original active-site visualization.
ST3Gal-I sialyltransferase: structure and molecular dynamics
A guide to the mammalian sialyltransferase structure, its bound ligands and the interpretation of the accompanying simulation.
An exported bacterial alarmone synthetase: PDB 8VX3
Explore the structure used in the original visualization of a Streptomyces albidoflavus alarmone synthetase.
AMPK alpha-2 kinase domain in motion: PDB 3AQV
An English reading guide to an AMPK-domain visualization based on the T172D, compound C-bound structural model.
HPK1 inhibitor complex: a second molecular dynamics view
A complementary view of the HPK1 9H8D complex, with guidance on binding contacts and the limits of simulation evidence.
HPK1–inhibitor dynamics: the 9H8D structural model
Explore the HPK1 kinase–inhibitor complex and distinguish the experimental starting structure from a simulated trajectory.
Alpha-glucosidase allostery: a molecular dynamics visualization
An English guide to the original visualization of alpha-glucosidase, ligand binding and possible changes at a distant active site.
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